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EBCL-0042

RNA-Binders

RNA molecules play a crucial role in transferring cellular information and regulating gene activity, and they have been associated with numerous human diseases. Small molecules, whether synthetic or natural, designed to specifically bind to certain RNA structures—called RNA binders—are vital for managing cellular processes. These RNA binders are being investigated for therapeutic applications, especially for conditions linked to RNA misregulation, such as cancer, neurodegenerative diseases, as well as in understanding viral mechanisms and bacterial regulation.

Compounds in our Library of RNA-Binders bind to key regions such as expanded repeats associated with Fragile X syndrome, Huntington's disease, and Myotonic dystrophy, as well as viral response elements like the HIV-1 Rev Response Element (RRE). Additionally, we offer ligands for bacterial riboswitches and small nuclear ribonucleoproteins (snRNPs) involved in splicing complexes. Each compound is accompanied by detailed information about the RNA binding region, including whether it interacts with mRNA, snRNA, or splicing complexes.


Related Terms: mRNA, RNA-binding, Exon, Riboswitch, RRE.

Library image center

Preplated options

Dry powder/solution (DMSO)Dry powder
Number of compounds56
Comment
Dry powder/solution (DMSO)DMSO
Number of compounds58
Comment

Highlights

Molecule highlight
EBC-07866CAS: 123948-87-8

Topotecan is an antineoplastic agent that works by inhibiting DNA topoisomerases.

Molecule highlight
EBC-550079CAS: 500350-31-2

It inhibits the expression of Creuzfeld-Jakob Disease prion proteins at the level of message translation.

Molecule highlight
EBC-550078CAS: 1209900-27-5

It targets the toxic RNA that causes myotonic dystrophy type 1.

Molecule highlight
EBC-06745CAS: 7780-20-3

Piperine exhibits antianaphylactic effects through regulating Mas-related G-protein coupled receptor member X2 activation.

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Disclaimer

All our products are for research purpose only. Any personal or non-scientific use is strictly prohibited.

Note

All the compounds with solubility below 10 mM are shipped as 2 mM solutions.

Product Features

  • The RNA-Binders Collection is a curated set of 56 small molecules with well-documented binding interactions for specific RNA targets.
  • Each compound includes detailed information on both the target and the RNA binding region, ensuring precise targeting—whether it’s within exons, introns, or untranslated regions—with references to the original literature
  • Calculated structural diversity of the collection: 0.86.
  • NMR and LCMS validated purity.
  • All the compounds are available in stock for hit follow-up.
  • The library is continuously updated.

Product Details

  • Format: 10 - 100 µL of 10 mM DMSO stock solutions; dry powders (1 mg);
  • Container: 384-well microplates;
  • Storage: - 18 °C;
  • Shipping: Dry ice.

Utility

  • High throughput screening (HTS);
  • High content screening (HCS);
  • Cherry picking.